FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index13_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20349123 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4278800 | 2.5818596 | 5.081304 | 1 |
| CCTGG | 4265725 | 2.5653374 | 5.963449 | 1 |
| GAAGA | 4265625 | 2.5239496 | 5.018563 | 2 |
| AAGAA | 4344905 | 2.5075462 | 5.005446 | 2 |
| CTTCT | 4410820 | 2.5066547 | 5.4067893 | 1 |
| CTGGA | 4040530 | 2.4062111 | 8.741509 | 1 |
| TCCAG | 3976945 | 2.33277 | 5.5191374 | 2 |
| CTCCT | 3991360 | 2.2983243 | 7.294476 | 1 |
| CTGGG | 3691340 | 2.2537656 | 8.279651 | 1 |
| CAGGA | 3714115 | 2.2192676 | 5.5989985 | 1 |
| CTTCA | 3843855 | 2.191801 | 5.7369723 | 1 |
| CTCCA | 3731950 | 2.1561809 | 7.9316325 | 1 |
| CCCAG | 3618875 | 2.1508553 | 7.057385 | 1 |
| CAGAA | 3542570 | 2.064636 | 5.018888 | 1 |
| CTCTG | 3421345 | 2.0001395 | 6.079226 | 1 |
| CTGGC | 3138025 | 1.8871574 | 5.3894296 | 1 |
| TGGAA | 3126505 | 1.8437337 | 5.286864 | 2 |
| CTGAA | 3134520 | 1.8206946 | 5.26665 | 1 |
| CTCAG | 2940720 | 1.724948 | 6.237446 | 1 |
| CTGGT | 2784670 | 1.6527616 | 5.0266485 | 1 |
| CTTGG | 2744995 | 1.6292136 | 5.3309693 | 1 |